If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ), 'gf_id' => 'HOM05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000676' ), 'data_identifier' => 'HOM05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '848', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p62340' => 'bna', 'A03p62350' => 'bna', 'A07p05720' => 'bna', 'A08p17360' => 'bna', 'A08p24100' => 'bna', 'A09p18310' => 'bna', 'A09p30290' => 'bna', 'Aa31LG11G8020' => 'aar', 'Aa31LG1G4850' => 'aar', 'Aa31LG2G10720' => 'aar', 'Aa31LG4G13150' => 'aar', 'Aa31LG6G16520' => 'aar', 'Aa31sc322G20' => 'aar', 'Aa31sc322G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_369.246' => 'aag', 'Actinidia00369' => 'ach', 'Actinidia00370' => 'ach', 'Actinidia00371' => 'ach', 'Actinidia00613' => 'ach', 'Actinidia10241' => 'ach', 'Actinidia19280' => 'ach', 'Actinidia20501' => 'ach', 'Actinidia20502' => 'ach', 'Actinidia34360' => 'ach', 'Ah.01g022820' => 'amhyb', 'AL1G20750' => 'aly', 'AL2G17850' => 'aly', 'AL3G46390' => 'aly', 'AL6G41800' => 'aly', 'AL7G10540' => 'aly', 'AL7G17610' => 'aly', 'AL7G17620' => 'aly', 'AL7G17630' => 'aly', 'AL7G17640' => 'aly', 'AL7G17650' => 'aly', 'Aqoxy2G02595' => 'aox', 'Aqoxy5G00831' => 'aox', 'Aqoxy5G03440' => 'aox', 'Aqoxy5G03444' => 'aox', 'Aqoxy6G02237' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0G8G64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0P6Y6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EG3HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7F80QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6W5P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BPH8K0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BYT55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6L1N7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4E1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ24II' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0V5T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN6V2X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SZ8ZKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5FRRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ1A4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TQB2DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAF10I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZR77DN' => 'arhy', 'AT1G10050' => 'ath', 'AT1G58370' => 'ath', 'AT2G14690' => 'ath', 'AT4G08160' => 'ath', 'AT4G33810' => 'ath', 'AT4G33820' => 'ath', 'AT4G33830' => 'ath', 'AT4G33840' => 'ath', 'AT4G33860' => 'ath', 'AT4G38300' => 'ath', 'AT4G38650' => 'ath', 'ATR0629G034' => 'atr', 'ATR0810G059' => 'atr', 'ATR1153G013' => 'atr', 'Atru.chr13.900' => 'acertr', 'Atru.chr13.901' => 'acertr', 'Atru.chr13.902' => 'acertr', 'Atru.chr3.3880' => 'acertr', 'Atru.chr3.3881' => 'acertr', 'Atru.chr5.2338_Atru.chr5.2339' => 'acertr', 'Atru.chr5.2343' => 'acertr', 'Atru.chr5.2344' => 'acertr', 'AUR62010063' => 'cqu', 'AUR62013056' => 'cqu', 'AUR62018459' => 'cqu', 'AUR62018485' => 'cqu', 'AUR62020935' => 'cqu', 'AUR62020960' => 'cqu', 'AUR62027008' => 'cqu', 'AUR62030847' => 'cqu', 'AUR62034971' => 'cqu', 'AUR62040107' => 'cqu', 'BcaB01g01265' => 'bca', 'BcaB03g11872' => 'bca', 'BcaB03g11873' => 'bca', 'BcaB03g12217' => 'bca', 'BcaB03g16252' => 'bca', 'BcaB04g17972' => 'bca', 'BcaC01g00247' => 'bca', 'BcaC01g00961' => 'bca', 'BcaC01g00962' => 'bca', 'BcaC01g00963' => 'bca', 'BcaC04g20875' => 'bca', 'BcaC04g22148' => 'bca', 'BcaC06g36005' => 'bca', 'BcaC07g41844' => 'bca', 'BcaC08g44728' => 'bca', 'BcaNung02914' => 'bca', 'BcaNung02918' => 'bca', 'BcaNung02920' => 'bca', 'BcaNung04327' => 'bca', 'BcaNung04328' => 'bca', 'BolC3t19976H' => 'bol', 'BolC3t20928H' => 'bol', 'BolC3t20929H' => 'bol', 'BolC3t20930H' => 'bol', 'BolC7t41321H' => 'bol', 'BolC7t46434H' => 'bol', 'BolC7t46435H' => 'bol', 'BolC7t46436H' => 'bol', 'BolC7t46438H' => 'bol', 'BolC7t46439H' => 'bol', 'BolC9t55197H' => 'bol', 'BolC9t56678H' => 'bol', 'BraA03t15304Z' => 'bra', 'BraA03t15306Z' => 'bra', 'BraA07t28373Z' => 'bra', 'BraA08t33695Z' => 'bra', 'BraA08t33696Z' => 'bra', 'BraA08t34365Z' => 'bra', 'BraA09t37461Z' => 'bra', 'BraA09t38599Z' => 'bra', 'C03p68540' => 'bna', 'C03p77210' => 'bna', 'C03p86380' => 'bna', 'C05p11790' => 'bna', 'C07p09100' => 'bna', 'C07p59900' => 'bna', 'C07p59920' => 'bna', 'C07p59930' => 'bna', 'C07p59950' => 'bna', 'C07p59960' => 'bna', 'C07p59980' => 'bna', 'C09p22800' => 'bna', 'C09p38300' => 'bna', 'CAN.G1.53' => 'can', 'CAN.G174.9' => 'can', 'CAN.G416.43' => 'can', 'CAN.G523.44' => 'can', 'CAN.G588.51' => 'can', 'CAN.G606.61' => 'can', 'CAN.G606.62' => 'can', 'CAN.G606.63' => 'can', 'CAN.G607.2' => 'can', 'CAN.G635.35' => 'can', 'CAN.G840.5' => 'can', 'CAN.G865.2' => 'can', 'CANSAT25G1732' => 'cansat', 'CANSAT25G2511' => 'cansat', 'CANSAT25G2571' => 'cansat', 'CANSAT25G3316' => 'cansat', 'CANSAT25G3385' => 'cansat', 'CANSAT25G3525' => 'cansat', 'CANSAT25G3579' => 'cansat', 'CARHR010160' => 'chi', 'CARHR106600' => 'chi', 'CARHR146060' => 'chi', 'CARHR146070' => 'chi', 'CARHR146090' => 'chi', 'CARHR183040' => 'chi', 'CARHR241900' => 'chi', 'CARHR241910' => 'chi', 'CARHR241920' => 'chi', 'CARHR241930' => 'chi', 'CARHR241950' => 'chi', 'CARHR259270' => 'chi', 'CARHR284140' => 'chi', 'CARHR286410' => 'chi', 'CARHR294370' => 'chi', 'Carub.0001s0947' => 'cru', 'Carub.0002s0617' => 'cru', 'Carub.0003s2871' => 'cru', 'Carub.0006s2671' => 'cru', 'Carub.0007s0052' => 'cru', 'Carub.0007s0659' => 'cru', 'Carub.0007s0660' => 'cru', 'Carub.0007s0661' => 'cru', 'Carub.0007s0662' => 'cru', 'Ca_02940_v3' => 'car', 'Ca_02941_v3' => 'car', 'Ca_05184_v3' => 'car', 'Ca_13196_v3' => 'car', 'Ca_15306_v3' => 'car', 'Ca_15880_v3' => 'car', 'CBR_g7986' => 'cbr', 'Cc02_g16350' => 'ccan', 'Cc02_g16360' => 'ccan', 'Cc02_g19840' => 'ccan', 'Cc02_g19890' => 'ccan', 'Cc10_g07860' => 'ccan', 'Cc10_g07870' => 'ccan', 'Cc10_g07880' => 'ccan', 'CDE02G0332' => 'cde', 'CDE04G0177' => 'cde', 'CDE04G2155' => 'cde', 'CDE05G0730' => 'cde', 'CDE06G1673' => 'cde', 'CDE07G1867' => 'cde', 'Cfa004662' => 'cfa', 'Cfa004664' => 'cfa', 'Cfa005221' => 'cfa', 'Cfa017916' => 'cfa', 'Ciclev10000171m.g' => 'ccl', 'Ciclev10028089m.g' => 'ccl', 'Ciclev10028121m.g' => 'ccl', 'Ciclev10030219m.g' => 'ccl', 'Ciclev10030382m.g' => 'ccl', 'CiPaw.05G018000' => 'cil', 'CiPaw.05G018200' => 'cil', 'CiPaw.06G123500' => 'cil', 'CiPaw.15G043100' => 'cil', 'ClCG02G006850' => 'cla', 'ClCG02G011770' => 'cla', 'ClCG05G017670' => 'cla', 'ClCG10G010240' => 'cla', 'COL.COLO4_17306' => 'col', 'COL.COLO4_25075' => 'col', 'COL.COLO4_25076' => 'col', 'COL.COLO4_32512' => 'col', 'COL.COLO4_32513' => 'col', 'COL.COLO4_38405' => 'col', 'Cpa.g.sc106.44' => 'cpa', 'Cpa.g.sc106.45' => 'cpa', 'Cpa.g.sc160.18' => 'cpa', 'Cpa.g.sc160.19' => 'cpa', 'Cpa.g.sc169.45' => 'cpa', 'Cpa.g.sc37.165' => 'cpa', 'CsaV3_2G015900' => 'csa', 'CsaV3_4G000190' => 'csa', 'CsaV3_4G035400' => 'csa', 'CsaV3_5G011220' => 'csa', 'CsaV3_7G007800' => 'csa', 'CSS0003924' => 'camsi', 'CSS0011804' => 'camsi', 'CSS0013320' => 'camsi', 'CSS0022986' => 'camsi', 'CSS0027413' => 'camsi', 'CSS0030788' => 'camsi', 'CSS0033079' => 'camsi', 'CSS0041825' => 'camsi', 'DCAR_002116' => 'dca', 'DCAR_009539' => 'dca', 'DCAR_015641' => 'dca', 'DCAR_019341' => 'dca', 'DCAR_021860' => 'dca', 'DCAR_022774' => 'dca', 'Dinv00209' => 'din', 'Dinv00484' => 'din', 'Dinv01226' => 'din', 'Dinv06990' => 'din', 'Dinv06991' => 'din', 'Dinv06992' => 'din', 'Dinv06993' => 'din', 'Dinv06994' => 'din', 'Dinv15809' => 'din', 'Dinv25264' => 'din', 'Dinv35416' => 'din', 'Dinv35417' => 'din', 'Dinv35432' => 'din', 'Dinv41956' => 'din', 'Dinv41957' => 'din', 'Dinv44916' => 'din', 'Duzib052G0273' => 'dzi', 'Duzib093G1982' => 'dzi', 'Duzib116G0909' => 'dzi', 'Duzib132G0626' => 'dzi', 'Duzib132G1121' => 'dzi', 'Duzib132G1143' => 'dzi', 'Duzib248G0602' => 'dzi', 'ECA232G1069' => 'eca', 'ECA234G1031' => 'eca', 'ECA234G1289' => 'eca', 'ECA240G0439' => 'eca', 'ECA246G3239' => 'eca', 'EL10Ac1g02333' => 'bvu', 'EL10Ac3g07384' => 'bvu', 'EL10Ac6g13257' => 'bvu', 'EL10Ac9g21405' => 'bvu', 'EL10Ac9g22199' => 'bvu', 'Eucgr.F00108' => 'egr', 'Eucgr.F00109' => 'egr', 'Eucgr.F02205' => 'egr', 'Eucgr.G01205' => 'egr', 'Eucgr.G01206' => 'egr', 'Eucgr.G01209' => 'egr', 'Eucgr.G01210' => 'egr', 'Eucgr.G01213' => 'egr', 'Eucgr.G01214' => 'egr', 'Eucgr.G01215' => 'egr', 'Eucgr.G01217' => 'egr', 'Eucgr.G01773' => 'egr', 'Eucgr.I01059' => 'egr', 'Eucgr.I01060' => 'egr', 'Eucgr.I01061' => 'egr', 'FAN11G1014' => 'fan', 'FAN15G0992' => 'fan', 'FAN15G1015' => 'fan', 'FAN15G1655' => 'fan', 'FAN15G2355' => 'fan', 'FAN15G3068' => 'fan', 'FAN15G3372' => 'fan', 'FAN16G3471' => 'fan', 'FAN20G0167' => 'fan', 'FAN20G0563' => 'fan', 'FAN20G2205' => 'fan', 'FAN20G2236' => 'fan', 'FAN20G2942' => 'fan', 'FAN24G1404' => 'fan', 'FAN24G1503' => 'fan', 'FAN24G1557' => 'fan', 'FAN24G1671' => 'fan', 'FAN24G2362' => 'fan', 'FAN24G2922' => 'fan', 'FAN25G0623' => 'fan', 'FAN27G0044' => 'fan', 'FAN27G0054' => 'fan', 'FAN27G0622' => 'fan', 'FAN27G1695' => 'fan', 'FvH4_2g01510' => 'fve', 'FvH4_2g03740' => 'fve', 'FvH4_2g03791' => 'fve', 'FvH4_2g03792' => 'fve', 'FvH4_2g03793' => 'fve', 'FvH4_2g03840' => 'fve', 'FvH4_2g32390' => 'fve', 'FvH4_3g40060' => 'fve', 'Glyma.04G004600' => 'gma', 'Glyma.04G049700' => 'gma', 'Glyma.04G170850' => 'gma', 'Glyma.06G004400' => 'gma', 'Glyma.06G050200' => 'gma', 'Glyma.10G256900' => 'gma', 'Glyma.10G257000' => 'gma', 'Glyma.11G105100' => 'gma', 'Glyma.11G105200' => 'gma', 'Glyma.14G091300' => 'gma', 'Glyma.17G232200' => 'gma', 'Glyma.20G134200' => 'gma', 'Glyma.20G134500' => 'gma', 'Gohir.A01G125025' => 'ghi', 'Gohir.A01G166300' => 'ghi', 'Gohir.A02G078701' => 'ghi', 'Gohir.A03G182300' => 'ghi', 'Gohir.A03G182400' => 'ghi', 'Gohir.A05G213200' => 'ghi', 'Gohir.A05G213300' => 'ghi', 'Gohir.A06G027300' => 'ghi', 'Gohir.A07G188760' => 'ghi', 'Gohir.A12G019600' => 'ghi', 'Gohir.A13G233266' => 'ghi', 'Gohir.D01G157500' => 'ghi', 'Gohir.D02G170675' => 'ghi', 'Gohir.D02G204000' => 'ghi', 'Gohir.D02G204050' => 'ghi', 'Gohir.D05G216600' => 'ghi', 'Gohir.D05G216700' => 'ghi', 'Gohir.D06G024600' => 'ghi', 'Gohir.D07G116460' => 'ghi', 'Gohir.D08G140775' => 'ghi', 'Gohir.D10G086880' => 'ghi', 'Gohir.D10G132401' => 'ghi', 'Gohir.D11G078100' => 'ghi', 'Gohir.D12G019800' => 'ghi', 'Gohir.D12G206084' => 'ghi', 'Gorai.002G195600' => 'gra', 'Gorai.005G028800' => 'gra', 'Gorai.005G231100' => 'gra', 'Gorai.005G231200' => 'gra', 'Gorai.008G020100' => 'gra', 'Gorai.009G223500' => 'gra', 'Gorai.009G223600' => 'gra', 'Gorai.010G029100' => 'gra', 'Gorai.011G146100' => 'gra', 'Gorai.011G281800' => 'gra', 'GSVIVG01009272001' => 'vvi', 'GSVIVG01024049001' => 'vvi', 'GSVIVG01037825001' => 'vvi', 'GSVIVG01037832001' => 'vvi', 'GSVIVG01037833001' => 'vvi', 'HanXRQChr03g0073031' => 'han', 'HanXRQChr03g0073041' => 'han', 'HanXRQChr04g0128631' => 'han', 'HanXRQChr05g0163611' => 'han', 'HanXRQChr08g0224871' => 'han', 'HanXRQChr08g0224881' => 'han', 'HanXRQChr09g0245461' => 'han', 'HanXRQChr09g0253851' => 'han', 'Haze_02163' => 'cav', 'Haze_10259' => 'cav', 'Haze_10261' => 'cav', 'Haze_18232' => 'cav', 'Haze_18234' => 'cav', 'Hma1.2p1_0032F.1_g019510' => 'hma', 'Hma1.2p1_0167F.1_g073970' => 'hma', 'Hma1.2p1_0373F.1_g138445' => 'hma', 'Hma1.2p1_0450F.1_g155635' => 'hma', 'Hma1.2p1_1078F.1_g254780' => 'hma', 'Hma1.2p1_1155F.1_g262260' => 'hma', 'Hma1.2p1_1155F.1_g262270' => 'hma', 'Hma1.2p1_1155F.1_g262275' => 'hma', 'Hma1.2p1_1773F.1_g301800' => 'hma', 'Hma1.2p1_3068F.1_g332310' => 'hma', 'Hma1.2p1_3068F.1_g332320' => 'hma', 'Hma1.2p1_3068F.1_g332330' => 'hma', 'Hma1.2p1_3068F.1_g332340' => 'hma', 'Hma1.2p1_3068F.1_g332345' => 'hma', 'Hma1.2p1_4131F.1_g338360' => 'hma', 'HPP92_001852' => 'vpl', 'HPP92_004982' => 'vpl', 'HPP92_009487' => 'vpl', 'HPP92_009488' => 'vpl', 'HPP92_009544' => 'vpl', 'HPP92_018794' => 'vpl', 'HPP92_018799' => 'vpl', 'HPP92_023702' => 'vpl', 'Hund00032' => 'sun', 'Hund00427' => 'sun', 'Hund05254' => 'sun', 'Lalb_Chr01g0001661' => 'lal', 'Lalb_Chr03g0024991' => 'lal', 'Lalb_Chr03g0025051' => 'lal', 'Lalb_Chr06g0165101' => 'lal', 'Lalb_Chr08g0245131' => 'lal', 'Lalb_Chr19g0139261' => 'lal', 'Lalb_Chr22g0355901' => 'lal', 'Lalb_Chr23g0265061' => 'lal', 'Lj1g0001472' => 'lja', 'Lj1g0028218' => 'lja', 'Lj3g0006550' => 'lja', 'Lj4C749T1' => 'lonja', 'Lj4g0005739' => 'lja', 'Lj5A182G116' => 'lonja', 'Lj5A234T88' => 'lonja', 'Lj5C182T6' => 'lonja', 'Lj5C238T10' => 'lonja', 'Lj5g0004068' => 'lja', 'Lj5g0011677' => 'lja', 'Lj5g0027242' => 'lja', 'Lj9A391T52' => 'lonja', 'Lj9C328T3' => 'lonja', 'Lsat_1_v5_gn_4_73720' => 'lsa', 'Lsat_1_v5_gn_4_73780' => 'lsa', 'Lsat_1_v5_gn_4_97661' => 'lsa', 'Lsat_1_v5_gn_6_108781' => 'lsa', 'Lsat_1_v5_gn_9_112760' => 'lsa', 'Lsat_1_v5_gn_9_79720' => 'lsa', 'Lsat_1_v5_gn_9_90101' => 'lsa', 'Lsat_1_v5_gn_9_90121' => 'lsa', 'Manes.05G185101' => 'mes', 'Manes.05G185300' => 'mes', 'Manes.05G185400' => 'mes', 'Manes.07G058900' => 'mes', 'Manes.07G059100' => 'mes', 'Manes.07G059200' => 'mes', 'Manes.07G059300' => 'mes', 'Manes.07G059400' => 'mes', 'Manes.11G095700' => 'mes', 'Manes.18G051800' => 'mes', 'Mapoly0097s0091' => 'mpo', 'MBI11_g24564_MAGBIO' => 'mbi', 'MBI16_g07980_MAGBIO' => 'mbi', 'MBI16_g31803_MAGBIO' => 'mbi', 'MBI16_g38689_MAGBIO' => 'mbi', 'MBI16_g44927_MAGBIO' => 'mbi', 'MD05G1100700' => 'mdo', 'MD05G1100800' => 'mdo', 'MD05G1100900' => 'mdo', 'MD05G1119000' => 'mdo', 'MD05G1119200' => 'mdo', 'MD08G1075100' => 'mdo', 'MD10G1105900' => 'mdo', 'MD10G1106500' => 'mdo', 'MD10G1122000' => 'mdo', 'MD10G1122200' => 'mdo', 'MD15G1062600' => 'mdo', 'Medtr1463s0010' => 'mtr', 'Medtr1g017020' => 'mtr', 'Medtr1g069205' => 'mtr', 'Medtr1g106200' => 'mtr', 'Medtr1g106770' => 'mtr', 'Medtr1g106790' => 'mtr', 'Medtr1g106910' => 'mtr', 'Medtr3g103610' => 'mtr', 'Medtr3g117800' => 'mtr', 'Medtr4g074070' => 'mtr', 'Medtr4g121520' => 'mtr', 'Medtr5g049180' => 'mtr', 'Medtr7g024420' => 'mtr', 'MELO3C016851.2' => 'cme', 'MELO3C018013.2' => 'cme', 'MELO3C018522.2' => 'cme', 'MELO3C020804.2' => 'cme', 'MELO3C026811.2' => 'cme', 'Migut.B00583' => 'egut', 'Migut.B01203' => 'egut', 'Migut.H00741' => 'egut', 'Migut.L00896' => 'egut', 'Migut.N01131' => 'egut', 'Migut.N01134' => 'egut', 'Migut.N01135' => 'egut', 'Migut.N01137' => 'egut', 'Migut.N01138' => 'egut', 'Migut.N01139' => 'egut', 'Migut.N01304' => 'egut', 'Migut.O00565' => 'egut', 'Migut.O00566' => 'egut', 'MSTRG.23439' => 'ama', 'MSTRG.2663' => 'ama', 'MSTRG.27580' => 'ama', 'Nitab4.5_0000247g0020' => 'nta', 'Nitab4.5_0000354g0010' => 'nta', 'Nitab4.5_0000863g0130' => 'nta', 'Nitab4.5_0000956g0040' => 'nta', 'Nitab4.5_0001161g0060' => 'nta', 'Nitab4.5_0001614g0110' => 'nta', 'Nitab4.5_0001614g0120' => 'nta', 'Nitab4.5_0001889g0150' => 'nta', 'Nitab4.5_0001891g0090' => 'nta', 'Nitab4.5_0003656g0020' => 'nta', 'Nitab4.5_0003959g0060' => 'nta', 'Nitab4.5_0004495g0030' => 'nta', 'Nitab4.5_0004495g0040' => 'nta', 'Nitab4.5_0004634g0010' => 'nta', 'Nitab4.5_0004634g0020' => 'nta', 'Nitab4.5_0004679g0100' => 'nta', 'Nitab4.5_0005837g0090' => 'nta', 'Nitab4.5_0006497g0010' => 'nta', 'Nitab4.5_0007149g0020' => 'nta', 'Nitab4.5_0008009g0020' => 'nta', 'Nitab4.5_0010820g0010' => 'nta', 'Nitab4.5_0010889g0010' => 'nta', 'Nitab4.5_0010953g0010' => 'nta', 'Nitab4.5_0011911g0010' => 'nta', 'Nitab4.5_0017638g0010' => 'nta', 'Nitab4.5_0018741g0010' => 'nta', 'Nn1g06432' => 'nnu', 'Nn3g19528' => 'nnu', 'Nn5g27717' => 'nnu', 'Nn5g30584' => 'nnu', 'Nn5g30585' => 'nnu', 'Nn5g30700' => 'nnu', 'Nn5g30724' => 'nnu', 'Nn5g30853' => 'nnu', 'Nn8g39926' => 'nnu', 'Nn8g40499' => 'nnu', 'Oeu006676.1' => 'oeu', 'Oeu009670.1' => 'oeu', 'Oeu013793.1' => 'oeu', 'Oeu013794.1' => 'oeu', 'Oeu026835.1' => 'oeu', 'Oeu037802.1' => 'oeu', 'Oeu037805.1' => 'oeu', 'Oeu042827.1' => 'oeu', 'Oeu063287.2' => 'oeu', 'Os01g0134800' => 'osa', 'Os01g0134900' => 'osa', 'Os03g0201500' => 'osa', 'Os03g0201800' => 'osa', 'Os03g0201901' => 'osa', 'Os03g0243700' => 'osa', 'Os03g0672900' => 'osa', 'Os05g0298700' => 'osa', 'Os05g0304900' => 'osa', 'Os05g0305000' => 'osa', 'Os05g0319900' => 'osa', 'Os07g0456700' => 'osa', 'Os10g0351600' => 'osa', 'Os10g0351700' => 'osa', 'Peaxi162Scf00016g02931' => 'pax', 'Peaxi162Scf00042g02623' => 'pax', 'Peaxi162Scf00152g00049' => 'pax', 'Peaxi162Scf00152g00410' => 'pax', 'Peaxi162Scf00152g00434' => 'pax', 'Peaxi162Scf00152g00930' => 'pax', 'Peaxi162Scf00160g00838' => 'pax', 'Peaxi162Scf00362g00845' => 'pax', 'Peaxi162Scf00628g00413' => 'pax', 'Peaxi162Scf01060g00129' => 'pax', 'Peaxi162Scf01221g00031' => 'pax', 'Peaxi162Scf01350g00130' => 'pax', 'Peaxi162Scf01714g00003' => 'pax', 'PGR031G3559' => 'pgr', 'PGR042G0582' => 'pgr', 'PGR042G0964' => 'pgr', 'PGR042G1477' => 'pgr', 'PGR042G3875' => 'pgr', 'PGR083G1061' => 'pgr', 'PGR083G2269' => 'pgr', 'PGR142G3693' => 'pgr', 'PGSC0003DMG400004954' => 'stu', 'PGSC0003DMG400004955' => 'stu', 'PGSC0003DMG400006180' => 'stu', 'PGSC0003DMG400008420' => 'stu', 'PGSC0003DMG400009574' => 'stu', 'PGSC0003DMG400012044' => 'stu', 'PGSC0003DMG400012574' => 'stu', 'PGSC0003DMG400014606' => 'stu', 'PGSC0003DMG400023204' => 'stu', 'PGSC0003DMG400034611' => 'stu', 'PGSC0003DMG400043498' => 'stu', 'PGSC0003DMG402011539' => 'stu', 'Phvul.001G032300' => 'pvu', 'Phvul.001G032400' => 'pvu', 'Phvul.007G045400' => 'pvu', 'Phvul.007G045500' => 'pvu', 'Phvul.007G045900' => 'pvu', 'Phvul.009G075400' => 'pvu', 'Phvul.009G120500' => 'pvu', 'Phvul.011G033100' => 'pvu', 'Potri.002G113066' => 'ptr', 'Potri.002G113132' => 'ptr', 'Potri.004G173300' => 'ptr', 'Potri.009G087600' => 'ptr', 'Potri.009G087700' => 'ptr', 'Potri.009G087800' => 'ptr', 'Potri.009G087900' => 'ptr', 'Pp3c18_7680' => 'ppa', 'Pp3c22_10270' => 'ppa', 'Prupe.1G416600' => 'ppe', 'Prupe.8G145100' => 'ppe', 'Prupe.8G145200' => 'ppe', 'Prupe.8G145300' => 'ppe', 'Prupe.8G145600' => 'ppe', 'Prupe.8G145700' => 'ppe', 'Prupe.8G163400' => 'ppe', 'Psat0ss4454g0080' => 'psa', 'Psat2g093880' => 'psa', 'Psat5g002400' => 'psa', 'Psat5g049080' => 'psa', 'Psat6g025360' => 'psa', 'Psat6g214800' => 'psa', 'Psat6g214840' => 'psa', 'Psat6g214880' => 'psa', 'PSO017G3354' => 'pso', 'PSO170G2888' => 'pso', 'PSO541G1160' => 'pso', 'PSO541G1942' => 'pso', 'PSO541G2648' => 'pso', 'PSO541G4121' => 'pso', 'PSO541G6343' => 'pso', 'PSO675G0848' => 'pso', 'PSO675G4974' => 'pso', 'PSO675G7117' => 'pso', 'PSO675G8095' => 'pso', 'PSO675G8392' => 'pso', 'PSO724G1324' => 'pso', 'QL02p001896' => 'qlo', 'QL03p019250' => 'qlo', 'QL03p019287' => 'qlo', 'QL11p030440' => 'qlo', 'QL11p030492' => 'qlo', 'QL11p049601' => 'qlo', 'QL11p049612' => 'qlo', 'QL11p049670' => 'qlo', 'RcHm_v2.0_Chr5g0072221' => 'rch', 'RcHm_v2.0_Chr5g0072231' => 'rch', 'RcHm_v2.0_Chr5g0072241' => 'rch', 'RcHm_v2.0_Chr6g0244121' => 'rch', 'RcHm_v2.0_Chr6g0244171' => 'rch', 'RcHm_v2.0_Chr6g0252821' => 'rch', 'RcHm_v2.0_Chr6g0252831' => 'rch', 'RcHm_v2.0_Chr6g0252841' => 'rch', 'RcHm_v2.0_Chr6g0252851' => 'rch', 'RcHm_v2.0_Chr6g0310311' => 'rch', 'Rhsim06G0066300' => 'rsi', 'Rhsim06G0066600' => 'rsi', 'Rhsim06G0066700' => 'rsi', 'Rhsim11G0151600' => 'rsi', 'Rhsim11G0152800' => 'rsi', 'Rhsim11G0191100' => 'rsi', 'Sabra02G0089300' => 'sbr', 'Sabra02G0089400' => 'sbr', 'Sabra02G0089600' => 'sbr', 'Sabra02G0089700' => 'sbr', 'Sabra04G0115300' => 'sbr', 'Sabra09G0067800' => 'sbr', 'Sabra09G0067900' => 'sbr', 'Sabra09G0068000' => 'sbr', 'Sabra09G0068100' => 'sbr', 'Sabra09G0068200' => 'sbr', 'Sabra09G0102900' => 'sbr', 'SalBow1G0114' => 'sbo', 'SalBow1G7212' => 'sbo', 'SalBow2G2273' => 'sbo', 'SalBow3G0199' => 'sbo', 'SalBow3G0470' => 'sbo', 'SalBow3G1914' => 'sbo', 'SalBow3G2090' => 'sbo', 'SalBow6G1249' => 'sbo', 'SalBow6G2389' => 'sbo', 'SalBow6G2898' => 'sbo', 'SalBow6G3553' => 'sbo', 'SalBow6G5160' => 'sbo', 'SalBow6G5525' => 'sbo', 'SalBow6G5636' => 'sbo', 'SalBow6G6184' => 'sbo', 'SalBow6G6462' => 'sbo', 'SalBow6G6797' => 'sbo', 'SalBow7G1956' => 'sbo', 'Sc07g0007390' => 'sci', 'Sc08g0004440' => 'sci', 'Sc08g0004450' => 'sci', 'Sc08g0004460' => 'sci', 'Sc08g0004470' => 'sci', 'Sc08g0004480' => 'sci', 'Sc26g0004270' => 'sci', 'ScUNg0001520' => 'sci', 'ScUNg0001530' => 'sci', 'Sed0003555' => 'sed', 'Sed0004315' => 'sed', 'Sed0004893' => 'sed', 'Sed0012129' => 'sed', 'Sed0014059' => 'sed', 'Sed0014249' => 'sed', 'SEGI_03048' => 'sgi', 'SEGI_03377' => 'sgi', 'SEGI_26684' => 'sgi', 'SEGI_30822' => 'sgi', 'SEGI_39232' => 'sgi', 'SGA_v2.0_scaffold141G35596' => 'sas', 'SGA_v2.0_scaffold219G42530' => 'sas', 'SGA_v2.0_scaffold219G42532' => 'sas', 'SGA_v2.0_scaffold337G49187' => 'sas', 'SGA_v2.0_scaffold337G49189' => 'sas', 'SGA_v2.0_scaffold355G49775' => 'sas', 'SGA_v2.0_scaffold52G18903' => 'sas', 'SGA_v2.0_scaffold80G25848' => 'sas', 'SGA_v2.0_scaffold83G26332' => 'sas', 'SHI34084' => 'shi', 'SMO197G0093' => 'smo', 'SMO201G0040' => 'smo', 'SMO201G0230' => 'smo', 'Solyc01g105500.4' => 'sly', 'Solyc01g106980.2' => 'sly', 'Solyc01g106990.2' => 'sly', 'Solyc01g107000.3' => 'sly', 'Solyc01g111340.4' => 'sly', 'Solyc04g077190.4' => 'sly', 'Solyc05g051260.3' => 'sly', 'Solyc07g041170.2' => 'sly', 'Solyc10g055370.2' => 'sly', 'Solyc11g040330.2' => 'sly', 'Solyc11g043160.2' => 'sly', 'Solyc12g088210.3' => 'sly', 'Sopen01g047970' => 'spe', 'Sopen01g049260' => 'spe', 'Sopen01g049270' => 'spe', 'Sopen01g053400' => 'spe', 'Sopen04g030790' => 'spe', 'Sopen04g030800' => 'spe', 'Sopen05g029640' => 'spe', 'Sopen10g025150' => 'spe', 'Sopen11g018330' => 'spe', 'Sopen11g019610' => 'spe', 'Sopen12g030210' => 'spe', 'Sp1g08700' => 'spa', 'Sp2g05190' => 'spa', 'Sp3g27790' => 'spa', 'Sp6g10020' => 'spa', 'Sp7g31550' => 'spa', 'Sp7g31560' => 'spa', 'Sp7g31570' => 'spa', 'Sp7g37130' => 'spa', 'TAR381G0721' => 'tar', 'TAR381G1018' => 'tar', 'TAR381G1562' => 'tar', 'TAR568G0003' => 'tar', 'TAR628G0042' => 'tar', 'TAR628G0403' => 'tar', 'TAR628G0526' => 'tar', 'TAR628G0773' => 'tar', 'TAR628G1551' => 'tar', 'THA.LOC104806955' => 'tha', 'THA.LOC104807213' => 'tha', 'THA.LOC104807819' => 'tha', 'THA.LOC104816770' => 'tha', 'THA.LOC104819528' => 'tha', 'Thecc.02G063100' => 'tca', 'Thecc.02G117200' => 'tca', 'Thecc.02G117300' => 'tca', 'Thecc.02G117400' => 'tca', 'Thecc.07G093300' => 'tca', 'Thecc.08G081600' => 'tca', 'Thecc.08G081700' => 'tca', 'Thhalv10006640m.g' => 'esa', 'Thhalv10023109m.g' => 'esa', 'Thhalv10023172m.g' => 'esa', 'Thhalv10023244m.g' => 'esa', 'Thhalv10024805m.g' => 'esa', 'Thhalv10024995m.g' => 'esa', 'Thhalv10027468m.g' => 'esa', 'Thhalv10028466m.g' => 'esa', 'TPR.G13060' => 'tpr', 'TPR.G13145' => 'tpr', 'TPR.G21128' => 'tpr', 'TPR.G2651' => 'tpr', 'TPR.G2683' => 'tpr', 'TPR.G27081' => 'tpr', 'TPR.G27103' => 'tpr', 'TPR.G27106' => 'tpr', 'TPR.G27120' => 'tpr', 'TPR.G27131' => 'tpr', 'TPR.G27132' => 'tpr', 'TPR.G30201' => 'tpr', 'TPR.G3258' => 'tpr', 'TPR.G3299' => 'tpr', 'TPR.G38493' => 'tpr', 'TPR.G39074' => 'tpr', 'TPR.G823' => 'tpr', 'TWI56G0265' => 'twi', 'TWI59G1100' => 'twi', 'TWI59G1178' => 'twi', 'TWI75G0740' => 'twi', 'unitig_747.g21254' => 'ugi', 'unitig_747.g21255' => 'ugi', 'unitig_899.g15608' => 'ugi', 'vmacro01959' => 'vma', 'vmacro01960' => 'vma', 'vmacro01961' => 'vma', 'vmacro01962' => 'vma', 'vmacro02267' => 'vma', 'vmacro21398' => 'vma', 'vmacro21399' => 'vma', 'VMungo0647G2589' => 'vmu', 'VMungo0720G2708' => 'vmu', 'VMungo1127G0173' => 'vmu', 'VMungo1309G0317' => 'vmu', 'VMungo1309G2505' => 'vmu', 'VMungo1309G2758' => 'vmu', 'Zm00001eb007740' => 'zma', 'Zm00001eb010420' => 'zma', 'Zm00001eb027580' => 'zma', 'Zm00001eb125060' => 'zma', 'Zm00001eb125100' => 'zma', 'Zm00001eb217500' => 'zma', 'Zm00001eb241670' => 'zma', 'Zm00001eb306530' => 'zma', 'Zm00001eb400770' => 'zma', 'Zm00001eb400780' => 'zma', 'Zm00001eb420100' => 'zma' ) $gf_id = 'HOM05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000676' ) $data_identifier = 'HOM05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 1, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 11, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 7, 'chi' => (int) 15, 'cru' => (int) 9, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 6, 'din' => (int) 16, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 24, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 25, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 15, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 11, 'mtr' => (int) 13, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 3, 'nta' => (int) 26, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 14, 'pax' => (int) 13, 'pgr' => (int) 8, 'stu' => (int) 12, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 10, 'rsi' => (int) 6, 'sbr' => (int) 11, 'sbo' => (int) 18, 'sci' => (int) 9, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 9, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 11, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 5, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 4, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 6, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420100' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1